Season
- Season 3 2010-07-05
- Season 2 2009-07-30
- Season 1 2008-06-05
- Season 0 2007-05-07
Episode
- Episode 1: Several Leagues Under the Sea
- Episode 2: Eye Sea You
- Episode 3: Kid Nickels
- Episode 4: The Sweet Life
- Episode 5: Several Leagues Above the Sea
- Episode 6: That's a Wrap
- Episode 7: Cammie Island
- Episode 8: Shave and a Haircut, Two Friends
- Episode 9: Skooled
- Episode 10: Snarked!
- Episode 11: Foot Burn
- Episode 12: Hand It Over
- Episode 13: How the West Was Fun!
- Episode 14: K'nuckles Is a Filthy Rat
- Episode 15: Sittin' Muscle
- Episode 16: Knot Funny
- Episode 17: Lookin' for Love in All the Wrong Barrels
- Episode 18: Beard Buddies
- Episode 19: Pun Times with Punsie McKale
- Episode 20: Balance
- Episode 21: Mechanical Genie Island
- Episode 22: Revenge
- Episode 23: Oh, Brother
- Episode 24: Panfake
- Episode 25: Lead 'Em and Weep
- Episode 26: Sea Urchins
- Episode 27: Love Bugs (Dockmouth)
- Episode 28: Whale Times
- Episode 29: Sea Legs (Too Big for His Britches)
- Episode 30: No Syrup for Old Flapjacks
- Episode 31: Plant Man (The Rottenest Botanist)
- Episode 32: Fish Heads
- Episode 33: Something's a Miss
- Episode 34: Gone Wishin'
- Episode 35: Ben Boozled
- Episode 36: Candy Cruise Blues
- Episode 37: My Guardian Angel is Killing Me!!
- Episode 38: Dear Diary
- Episode 39: Diamonds in the Stuff (Down the Drain)
- Episode 40: Tee Hee Tummy Tums
The Marvelous Misadventures of Flapjack Season 1
A young boy who grew up inside a talking whale sets sail for magical Candied Island, accompanied by Capt. K'nuckles, a crusty old pirate.
